Data · dataset · 2013
treebase compendium: publication, R package, version history
Listed in DataCite
Description
treebase ======== _An R package for discovery, access and manipulation of online phylogenies_ - Publication in Methods in Ecology and Evolution - Development version source code on github - HTML package documentation - Report issues, bugs or feature requests Installation ------------ 'treebase' is available from CRAN.
You can install the latest version from the development website on github using the 'devtools' package from within R. Make sure you have the latest version for the best experience. '''r library(devtools) install_github("treebase", "ropensci") ''' Getting Started --------------- Use of the 'treebase' package should be relatively straight forward: '''r library(treebase) Phylogenies_from_Huelsenbeck ''' More interesting examples will take advantage of 'R' to loop over large amounts of treebase data that would be to tiresome to search for, download and analyze by hand.
Read the rest (3 more)
Welcome to the era of big data phylogenetics. - Browse the examples in the documentation - We are preparing a short manuscript to introduce the motivation, functions, and use-cases for the 'treebase' package. Meanwhile, a preprint is available as a dynamic document, where all of the examples shown are produced by the code shown using 'knitr'.
See source code. - treebase is part of the rOpenSci Project References ----------
- Carl Boettiger, Duncan Temple Lang (2012). Treebase: An R package for discovery, access and manipulation of online phylogenies, Methods in Ecology and Evolution. doi:10.1111/j.2041-210X.2012.00247.x
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/treebase_compendium_publication_R_package_ver… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.660848 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.660848 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.660848 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
- From keywords
- Earth & Environmental Science · Evolutionary biology
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.660848 | 14 d ago | JSON v1 |
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| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Environmental Science'] |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
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