AD Model Builder and AutoHotkey Code for Evaluating Genetic Stock Identification Software

In press. Comparison of the accuracy and consistency of likelihood-based estimation routines for genetic stock identification.

Methods in Ecology and Evolution combined.ahk - AutoHotkey script for running ONCOR and SPAM main.dat - AD Model Builder .dat file containing factors and factor levels to evaluate during simulations main.tpl - AD Model Builder .tpl file which is the driver program that loops over the factor levels and repeatedly calls the simulation program to produce a dataset and calls the other estimation routines to analyze the dataset mixbayes.tpl - AD Model Builder .tpl that implements the conditional penalized maximum likelihood estimation routine.