Omics · study · 2026
Single-nucleus RNA sequencing and functional studies of acute methamphetamine-induced cognitive impairment
Listed in NCBI GEO
Cognitive impairment is a hallmark phenotype of methamphetamine (Meth) abuse, yet the cellular mechanisms driving these deficits remain poorly understood.
Description
This study aims to investigate the cellular composition, gene expression profiles, key signaling pathways, intercellular communication networks, and transcription factor activity in hippocampal tissues from control mice and those acutely exposed to Meth, thereby elucidating the mechanistic underpinnings of Meth-induced neurotoxicity.
Single-nucleus RNA sequencing (snRNA-seq) was employed to investigate the transcriptomes of nuclei isolated from the hippocampus of acute Meth-treated and control mice. Our study provides a systemic understanding of the transcriptome alterations induced by Meth exposure in mouse hippocampus, which may offer clues for therapeutic strategies against acute Meth exposure.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE313nnn/GSE313595 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313595 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1380356 ncbi.nlm.nih.gov/bioproject/PRJNA1380356 ↗
project · from NCBI GEO
- PubMed 41699233 pubmed.ncbi.nlm.nih.gov/41699233 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE313595 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |