Data · dataset · 2023
Marine-montane transitions coupled with gill and genetic convergence in extant crustacean
Listed in ScienceDB
Description
Chromosomal-level genome of talitrid crustacean (Morinoia aosen) was constructed using HiFi-reads (PacBio), short-reads (Illumina) and Hi-C technology.A total of 239.88 Gb Illumina clean reads produced on the DNBseqTM platform (Illumina, San Diego, USA) were used for genome surveying and assembly correction after removal of low-quality reads and adapters. A total of 118.46 Gb of HiFi reads were generated for genomic contig assembly using hifiasm v0.15.2 with default parameters. The 266 Gb reads from the Hi-C library sequencing were used for chromosome construction after primarily filtered and mapped to the genome. We applied three strategies for gene structure prediction across the genome: homology-based annotation, de novo prediction, and RNAseq-based annotation.This dataset contains four files as bellow:(1) genome assembly file: IZCAS_Maosen_V1.fasta.gz;(2) fasta file of coding gene sequences: IZCAS_Morinoia aosen_genome.chr.cds.fa;(3) fasta file of proteins: IZCAS_Morinoia aosen_genome.chr.pep.fa;(4) GFF annotation file: IZCAS_Morinoia aosen_genome.chr.gff.We also have added seven files related to the study, including the alignment files, phylogenetic trees, and morphological data.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.07691 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Evolutionary biology 71% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.07691 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (71%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |