Data · study · 2026
The effect of TCOF1 silencing in renal cancer cells
Listed in NCBI GEO
TCOF1 is a nucleolar protein involved in ribosome biogenesis, response to DNA damage and oxidative stress.
Description
Clear cell renal cell cancer (ccRCC) is characterized by pronounced nucleolar pleomorphism which is utilized in the ccRCC tumor grading system. Here, we hypothesized that TCOF1 may contribute to the tumorigenesis of ccRCC.
To explore the impact of TCOF1 on ccRCC, we silenced its expression in ccRCC cells and analyzed their transcriptome using microarrays.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE299nnn/GSE299580 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299580 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1275013 ncbi.nlm.nih.gov/bioproject/PRJNA1275013 ↗
project · from NCBI GEO
- PubMed 41840584 pubmed.ncbi.nlm.nih.gov/41840584 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by array · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE299580 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-array | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |