Data · dataset · 2026
Chromosome-level genome of Berberis wilsoniae
Listed in ScienceDB
This study conducted whole genome assembly on diploid plant Berberis wilsoniae.
Description
We generated the first chromosome-scale reference genome of B. wilsoniae by integrating PacBio HiFi, Hi-C, and Illumina sequencing data. The assembled genome size was 1.23 Gb, with a contig N50 of 76.96 Mb and a scaffold N50 of 87.57 Mb; 99.16% of the assembly was anchored onto 14 chromosomes.
The assembly showed high completeness and accuracy, with a BUSCO completeness of 97.5% and a QV of 48.47. A total of 50,808 protein-coding genes were annotated. These results establish a key genomic resource for elucidating berberine-related metabolism in B. wilsoniae and provide new comparative evidence for the origin and diversification of defensive secondary metabolic pathways in Ranunculales and early-diverging eudicots.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.30499 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Genetics 72% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.30499 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (72%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |