Data · dataset · 2026
Bioinformatics-Based Identification of Key Fibroblast Module Biomarkers and Potential Drug Candidates in Osteoarthritis
Listed in ScienceDB
Objective To investigate synovial fibroblast–associated molecular features in osteoarthritis (OA), identify core genes with diagnostic value and functional relevance, and preliminarily explore potential small-molecule interactions.
Description
Methods
Single-cell RNA sequencing data and three bulk synovial transcriptome datasets were integrated. Cell type annotation, cell–cell communication analysis, and high-dimensional weighted gene co-expression network analysis (hdWGCNA) were performed to identify OA-related fibroblast modules. Module genes intersected with upregulated differentially expressed genes were defined as fibroblast-related gene sets, and core genes were screened using multiple machine learning algorithms.
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Diagnostic performance was evaluated using ROC analysis and validated in an external cohort. Functional and structural relevance was further explored through single-gene GSEA, virtual knockout analysis, and molecular docking.Results Seven synovial cell types were identified by single-cell analysis, with fibroblasts exhibiting enhanced intercellular communication in OA. HdWGCNA identified two OA-associated fibroblast modules, yielding 39 candidate genes mainly related to extracellular matrix organization.
Five core genes were ultimately identified, among which SSR4 and PRDX4 were significantly upregulated in OA and demonstrated strong diagnostic performance in both training and validation cohorts (AUC > 0.90). Functional analyses suggested their involvement in energy metabolism, extracellular matrix remodeling, and inflammatory signaling pathways. Molecular docking indicated that several small molecules, including vitamin E, L-methionine, and streptozotocin, showed stable binding conformations with SSR4 and PRDX4, with vitamin E exhibiting relatively favorable binding potential.Conclusion This study systematically characterizes fibroblast-driven molecular signatures in OA and identifies SSR4 and PRDX4 as potential diagnostic biomarkers and candidate intervention targets, providing a foundation for future mechanistic and drug discovery studies.
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Where it is published
- DOI doi.org/10.57760/sciencedb.j00217.11854 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 73% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Related
Provenance · 1 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.j00217.11854 | 12 d ago | JSON v1 |
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