Omics · study · 2026
Comparative RNA seq analysis of Salmonella Typhimurium and pimt gene deletion strain
Listed in NCBI GEO
Inside the host, Salmonella Typhimurium suffers but survives various stresses.
Description
Proteins are the prime targets of host inflammatory responses. S. Typhimurium encodes two key protein repair enzymes, methionine sulfoxide reductase (Msr) and protein iso-aspartate methyltransferase (PIMT), that reactivates damaged proteins without their translational synthesis.
Under stress, the accumulation of L-isoaspartate (Iso-asp) residues causes defects in protein shape and function, which lead to impaired bacterial survival. To examine the global transcriptional consequences of deleting pimt gene, RNA sequencing was performed on S. Typhimurium and Δpimt mutant strains. This dataset provides a comprehensive transcriptomic resource for investigating the impact of pimt deletion on virulence and pathogenicity in S. Typhimurium.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE320nnn/GSE320470 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320470 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1428262 ncbi.nlm.nih.gov/bioproject/PRJNA1428262 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE320470 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |