Data · dataset · 2026
The Canavalia gladiata T2T genome dataset
Listed in ScienceDB
This dataset comprises the telomere-to-telomere (T2T) genome dataset of sword bean (Canavalia gladiata), including raw sequencing reads, genome assembly, genome annotation files, whole-genome duplication (WGD) analysis results, and repeat annotation files.
Description
The C. gladiata sample was collected from BGI Space-Time Center in Shenzhen, Guangdong Province, China (22°36′24″N, 114°18′39″E), with leaf tissue obtained from seedlings.
Genome assembly was performed using a combination of Oxford Nanopore Technologies (ONT) ultra-long read sequencing and Hi-C chromatin conformation capture technology. The assembled genome size is 613.8 Mb, with a BUSCO completeness score of 99.6% and a quality value (QV) of 54.42. Genome annotation predicted a total of 24,319 protein-coding genes.
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Repetitive elements account for 61.03% of the genome. Whole-genome duplication analysis, based on syntenic analysis, revealed no recent lineage-specific WGD events in this species.The dataset includes the following files: raw sequencing data; genome assembly sequence file (FASTA format, ~585 MB); genome annotation file (GFF3 format, ~48.5 MB); whole-genome duplication analysis results (compressed archive, ~1.1 MB); and repeat annotation file (GFF format, ~195.8 MB).
FASTA and GFF formats are standard bioinformatics formats that can be visualized using genome browsers such as IGV or JBrowse, or processed via programming environments including Python (Biopython) and R (Biostrings). The dataset demonstrates high completeness with no systematic missing records, and the genome quality assessment results collectively confirm the reliability and accuracy of the data.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.40689 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.40689 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |