Omics · study · 2026
ChIP-seq analysis of IRF1 binding in VSV-infected bone marrow-derived macrophages (BMDMs)
Listed in NCBI GEO
This study examines the genome-wide binding profile of the transcription factor IRF1 in bone marrow-derived macrophages (BMDMs) infected with vesicular stomatitis virus (VSV) compared to uninfected controls.
Description
BMDMs were differentiated from mouse bone marrow cells via M-CSF stimulation and then infected with VSV (MOI = 1) for 4 hours or mock-treated. Chromatin immunoprecipitation (ChIP) was performed using an anti-IRF1 antibody, followed by next-generation sequencing (Illumina).
Data analysis included alignment to the mm10 genome, peak calling, and coverage normalization to identify IRF1 binding sites under viral infection. These results provide insights into IRF1's regulatory role in antiviral immune responses.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE308nnn/GSE308320 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308320 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1330187 ncbi.nlm.nih.gov/bioproject/PRJNA1330187 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE308320 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |