Omics · study · 2026
RNA Sequencing of the Long-Evans Rat Anterior Cingulate Cortex and Nucleus Accumbens Reveals Sex-Specific Developmental Changes and a Lingering Impact of Prenatal and Adolescent Alcohol Exposure in Females Only II
Listed in NCBI GEO
Prenatal alcohol exposure through maternal drinking and adolescent alcohol intake are the two most common forms of early alcohol consumption, which may produce synergistic impacts on health.
Description
Yet, few preclinical studies have used double-hit models to examine how effects manifest across sex and lifespan. In this study, RNA-seq was used to analyze the effects of ethanol on the anterior cingulate cortex (ACC) of adult and adolescent male and female Long-Evans rats (n = 5+ per group, N = 144) that were exposed to ethanol during gestation, adolescence, or both.
During prenatal exposure, dams received either ethanol liquid diet (PAE group: 2.2% v/v EtOH on gestational day [G]6-8, 4.5% on G9-10, and 6.7% on G11-20) or control diets (PF pair-fed, FCL free-choice liquid diet). In adolescence, offspring were exposed to alcohol (AAE: 11h of 10% EtOH in tap water, 1h water access, 12h of water deprivation daily from prenatal [P] day 27-41) or given ad libitum water access (VEH). Brains were collected on P42 (adolescence) and P90 (adulthood).
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Differentially expressed genes (DEGs) were identified via DESeq2, with the resulting p values adjusted using the Benjamini-Hochberg correction (≤ 0.05).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327221 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327221 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1449999 ncbi.nlm.nih.gov/bioproject/PRJNA1449999 ↗
project · from NCBI GEO
- PubMed 42134517 pubmed.ncbi.nlm.nih.gov/42134517 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327221 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |