Omics · dataset · 2025
Leishmania infantum JPCM5 sequencing reads generated from total RNA by Oxford Nanopore technology
Listed in e-cienciaDatos
This project was aimed to sequence total RNA from Leishmania infantum JPCM5 promastigotes using the Oxford Nanopore Technology (ONT) methodology.
Description
This dataset consists of two Fastq files, generated by MinION Mk1C (ONT) MC-114562 device (Basecalling was performed with MinKNOW (ONT) software model version rma002_70bps_hac@v3, with firmware MinION FPGA 2.4.3, ver. 23.07.12. These files are labelled: i) LinJ_RNA_ONT_sep2023.fastq, this file contains 575209 reads having an average q-score of 7 or higher. ii)LinJ_RNA_ONT_sep2023_FAIL.fastq, this file contains 49861 reads that did not pass the filter.
Links
Where it is published
- Dataverse dataset page edatos.consorciomadrono.es/dataset.xhtml?persistentId=doi%3A10.21950%2F2YWYGP ↗
landing page · from edatos consorciomadrono es
- DOI doi.org/10.21950/2ywygp ↗
DOI / persistent id · from edatos consorciomadrono es
Catalogue records · 1
- Dataverse API edatos.consorciomadrono.es/api/datasets/:persistentId/?persistentId=doi%3A10.21950%2F2YWY… ↗
metadata API · from edatos consorciomadrono es
Topics
- Stated by source
- Ciencias médicas, de la salud y de la vida
- From keywords
- Medicine & Health · RNA sequencing
- Inferred from text
- Medical biotechnology 68% · Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| e-cienciaDatos | doi:10.21950/2YWYGP | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3206 | enrichment · edatos consorciomadrono es | taxonomy-embedding@1.1.0 | title+keywords+description (68%) |
| concepts[field].dataverse_subject:ciencias-m-dicas-de-la-salud-y-de-la-vida | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /subjects |
| concepts[modality].local:modality:rna-seq | mapping · edatos consorciomadrono es | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:sequencing | enrichment · edatos consorciomadrono es | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| description | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /description |
| publication_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| title | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /name |
| updated_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| version_label | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 |