Constarium
← Search

Table · dataset · 2026

Ammopiptanthus mongolicus genome and annotation files

Listed in HKU DataHub and figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.34004601.v1

<p dir="ltr">Previous karyotyping studies have revealed that the genus <i>Ammopiptanthus</i> is diploid (2n = 2X = 18).

Description

The final assembly was 843.07 Mb in length, including 498 scaffolds and 1,374 contigs. The N50 length of the scaffolds was 92.57 Mb, while that of the contigs was 2.90 Mb.

The length of the nine chromosomes ranged from 70.9 Mb to 108.8 Mb. Protein-coding genes were predicted using combined homology-based, transcriptome-based, and ab initio gene prediction strategies, which yielded 47,611 protein-coding genes and 3,542 non-coding RNAs. The average coding sequence (CDS) length of protein-coding genes is 1,488 bp, with 5.5 exons in each gene.

Read the rest (3 more)

The total length of the genic regions was 222.31 Mb (26.37% of the genome). Functional annotation assigned putative functions to 91.44% of the protein-coding genes (43,536), based on sequence similarity searches against public databases. The 3,542 non-coding RNAs included 1,212 tRNAs, 380 rRNAs, 1,779 snRNAs, and 171 miRNAs.<br><br>The genome sequence and annotations were also deposited at the Chinese National Genomics Data Center (<a href="ngdc.cncb.ac.cn/" target="_blank" rel="noopener">ngdc.cncb.ac.cn/</a>) under BioProject accession number PRJCA024714.

Raw sequencing data were deposited in the NCBI Sequence Read Archive database (SRA, <a href="ncbi.nlm.nih.gov/sra" target="_blank" rel="noopener">ncbi.nlm.nih.gov/sra</a>) under accession number PRJNA1085185.</p><h3 dir="ltr">Citation</h3><p dir="ltr">Feng, L., Teng, F., Li, N., Zhang, J.C., Zhang, B.J., Tsai, S.N., Yue, X.L., Gu, L.F., Meng, G.H., Deng, T.Q., Tong, S.W., Wang, C.M., Li, Y., Shi, W., Zeng, Y.L., Jiang, Y.M., Yu, W.C., Ngai, S.M., An, L.Z., Lam, H.M., He, J.X. (2024) A reference-grade genome of the xerophyte Ammopiptanthus mongolicus sheds light on its evolution history in legumes and drought tolerance mechanisms.

Plant Communications 5: 100891 (DOI: <a href="doi.org/10.1016/j.xplc.2024.100891" target="_blank" rel="noopener">10.1016/j.xplc.2024.100891</a>)</p><h3 dir="ltr">Contact Information</h3><p dir="ltr">Dr. Lei Feng (lfeng@m.scnu.edu.cn)</p>

Links

Where it is published

Catalogue records · 1

Topics

Inferred from text
Sequencing 75%
Provenance · 3 source records, 34 field assertions
SourceKeyLast seenRaw
HKU DataHuboai:figshare.com:article/3400460111 d agoJSON v1
figshareoai:figshare.com:article/3400460111 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/3400460110 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].anzsrc:field:310509mapping · figshare comvocabulary-mapper@1.0.0keywords['Genomics']
concepts[field].anzsrc:field:310509mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Genomics']
concepts[field].anzsrc:field:310509mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Genomics']
concepts[field].local:field:astronomymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:computer-science-aimapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:earth-environmentalmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:economics-financemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:economics-financemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:engineeringmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:engineeringmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:humanitiesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:humanitiesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:materials-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:medicine-healthmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:psychology-behavioralmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:social-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[modality].local:modality:sequencingenrichment · datahub hku hkkeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · datahub hku hkconnector:datahub_hku_hk@1.0.0/metadata/dc/description
licensesource · datahub hku hkconnector:datahub_hku_hk@1.0.0/metadata/dc/rights
publication_datesource · datahub hku hkconnector:datahub_hku_hk@1.0.0
titlesource · datahub hku hkconnector:datahub_hku_hk@1.0.0/metadata/dc/title