Omics · study · 2026
Single cell RNA-seq of human synovium from patients with anterior cruciate ligament rupture
Listed in NCBI GEO
Single-cell RNA sequencing (scRNA-seq) was performed on human synovial tissues obtained from patients with anterior cruciate ligament rupture (ACLR) to characterize cellular programs associated with synovial tissue states.
Description
Osteoarthritis (OA) is a heterogeneous joint disease exhibiting substantial variability in synovial inflammation, vascularization, and fibrotic remodeling. In this study, synovial tissue samples from ACLR patients undergoing surgery were enzymatically dissociated and subjected to single-cell RNA sequencing.
Publicly available scRNA-seq datasets of OA synovium were used for comparison. These single-cell transcriptomic data were generated as part of a broader effort to investigate cellular heterogeneity in synovial tissue and its relationship to tissue microenvironments and disease pathology. The dataset provides a resource for comparative analysis of synovial cellular composition and may facilitate the identification of cell populations and signaling pathways associated with synovial remodeling and inflammation.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327891 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327891 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1452952 ncbi.nlm.nih.gov/bioproject/PRJNA1452952 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327891 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |