Data · dataset · 2014
Alignments and Trees for Chapter 2
Listed in DataCite
Data generated and used for species delimitation for the article: Tang, C. Q., Leasi, F., Obertegger, U., Kieneke, A., Barraclough, T. G., & Fontaneto, D. (2012).
Description
The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna. Proceedings of the National Academy of Sciences of the United States of America, 109, 16208–16212.
Each dataset (of which there 55) comprises sequences either downloaded from GenBank or sequenced by the co-authors. Alignments made with MAFFT within Geneious. These alignments were collapsed into haplotype alignments.
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Ultrametric trees were made from these using either BEAST or RaxML with r8s.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Alignments_and_Trees_for_doi_10_1073_pnas_120… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1177954 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1177954 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1177954 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
- From keywords
- Ecology · Evolutionary biology · Zoology
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1177954 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |