Raster · study · 2026
A cellular anatomy of normal adult human female urethra [Xenium]
Listed in NCBI GEO
A cellular atlas of healthy human female urethra could provide a better mechanistic understanding of voiding dysfunction and infection.
Description
Single cell RNA sequencing was performed on young adult human female urethra with in situ validation of putative cell types. The proximal urethra and dorsal ducts were shown to contain a transitional epithelium with basal, intermediate and luminal layers as well as rare neuroendocrine epithelia.
Squamous epithelium was predominantly found in the distal urethra. Novel fibroblast subtypes were validated in situ as displaying regional localization with insight into putative functions. Finally, a comparison of male prostatic urethra and female urethra was performed using both single cell and spatial transcriptomics.
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These data provide a cellular and molecular landscape of male and female urethra to be used as a reference for understanding disease.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE296nnn/GSE296852 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296852 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1261842 ncbi.nlm.nih.gov/bioproject/PRJNA1261842 ↗
project · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Other
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE296852 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |