Data · collection · 2015
Investigation of binding mechanism of novel 8-substituted coumarin derivatives with human serum albumin and α-1-glycoprotein
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Coumarin molecules have biological activities possessing lipid-controlling activity, anti-hepatitis C activity, anti-diabetic, anti-Parkinson activity, and anti-cancer activity.
Description
Here, we have presented an inclusive study on the interaction of 8-substituted-7-hydroxy coumarin derivatives (Umb-1/Umb-2) with α-1-glycoprotein (AGP) and human serum albumin (HSA) which are the major carrier proteins in the human blood plasma.
Binding constants obtained from fluorescence emission data were found to be K Umb-1 =3.1 ± .01 × 10 4 M −1 , K Umb-2 = 7 ± .01 × 10 4 M −1 , which corresponds to −6.1 and −6.5 kcal/mol of free energy for Umb-1 and Umb-2, respectively, suggesting that these derivatives bind strongly to HSA. Also these molecules bind to AGP with binding constants of K Umb-1-AGP =3.1 ± .01 × 10 3 M −1 and K Umb-2-AGP = 4.6 ± .01 × 10 3 M −1 .
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Further, the distance, r between the donor (HSA) and acceptor (Umb-1/Umb-2) was calculated based on the Forster’s theory of non-radiation energy transfer and the values were observed to be 1.14 and 1.29 nm in Umb-1–HSA and Umb-2–HSA system, respectively. The protein secondary structure of HSA was partially unfolded upon binding of Umb-1 and Umb-2. Furthermore, site displacement experiments with lidocaine, phenylbutazone (IIA), and ibuprofen (IIIA) proves that Umb derivatives significantly bind to subdomain IIIA of HSA which is further supported by docking studies.
Furthermore, Umb-1 binds to LYS402 with one hydrogen bond distance of 2.8 Å and Umb-2 binds to GLU354 with one hydrogen bond at a distance of 2.0 Å. Moreover, these molecules are stabilized by hydrophobic interactions and hydrogen bond between the hydroxyl groups of carbon-3 of coumarin derivatives.
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- Repository landing page figshare.com/collections/Investigation_of_binding_mechanism_of_novel_8_subs… ↗
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- DOI doi.org/10.6084/m9.figshare.c.2115410.v1 ↗
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- DataCite API api.datacite.org/dois/10.6084/m9.figshare.c.2115410.v1 ↗
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Topics
- Stated by source
- Biological sciences · Chemical sciences · Clinical medicine · Physical sciences
- From keywords
- Biochemistry and cell biology · Genetics · Immunology
Related
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.c.2115410.v1 | 13 d ago | JSON v1 |
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|---|---|---|---|
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| concepts[field].fos:chemical-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:clinical-medicine | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:physical-sciences | source · DataCite | connector:datacite@1.0.0 | |
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