Excel · study · 2026
Potentials of BMSCs for Regulating Osteogenic-Vascular-Neural- Lymphatic Coupling in Bone Regeneration
Listed in NCBI GEO
Description
Background
Bone regeneration assisted by synthetic bone substitutes largely depends on the integration of the vascular, neural, and lymphatic systems in the bone. BMSCs were considered to be the key cells for the process. However, their role in regulating the integration has not been fully characterized.
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Methods
Human BMSCs (hBMSCs) were treated with osteogenic induction and collected from 0 to 504 h for bulk RNA sequencing (RNA-Seq). Differentially expressed genes (DEGs) were identified and Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) and Time-Series Transcriptomic Trend Analysis were used to comprehensively analyze the possible pathways and functions involved with these DEGs. Weighted Gene Co-expression Network Analysis (WGCNA) were constructed to identify the modules and hub genes of the process. qRT-PCR and Enzyme-linked immunosorbent assay (ELISA) were porformed to validate the expression of key genes identified by RNA-Seq.
Results We found that the gene expression tendency of hBMSCs during osteogenic differentiation can be divided into a four-stage classification: the initial adaptation stage (1-24 h), the proliferation activation stage (24-72 h), the differentiation regulation stage (72-336 h) and the remodeling stability stage (336-504 h). And 72 h was identified as the key time of the osteogenic-vascular-neural-lymphatic coupling process, with typical activation of BMP, vascular endothelial growth factor (VEGF) and PPAR signaling pathways.
Four modules and closely related hub genes such as GDF5, MGP and PAPPA2 whose expression were validated by qRT-PCR and ELISA were also identified and highlighted. Conclusions Our study revealed the time temporal trends of angiogenesis, lymphangiogenesis, and neurogenesis during BMSCs osteogenic differentiation, which not only supplemented the transcriptional regulation in bone regeneration, but also provide a theoretical basis for the design of synthetic bone substitutes.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE313nnn/GSE313550 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313550 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1380305 ncbi.nlm.nih.gov/bioproject/PRJNA1380305 ↗
project · from NCBI GEO
- PubMed 42298623 pubmed.ncbi.nlm.nih.gov/42298623 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE313550 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |