Omics · study · 2026
RNA-seq analysis of TGF-beta1-stimulated human RPTEC/TERT1 cells treated with mesenchymal stem cell-conditioned media
Listed in NCBI GEO
Renal proximal tubular epithelial cell responses to mesenchymal stem cell-conditioned medium were examined in a TGF-beta1-induced profibrotic model.
Description
Human RPTEC/TERT1 cells were assigned to four conditions: untreated cells without TGF-beta1 or conditioned medium (NC); cells exposed to 10 ng/mL recombinant human TGF-beta1 for 24 h, followed by complete medium replacement with conditioned medium from immortalized human adipose-derived mesenchymal stem cells transfected with a negative-control miRNA mimic (TN) or a miR-29a-3p mimic (T29).
TGF-beta1 was maintained at 10 ng/mL throughout the subsequent 48 h conditioned-medium treatment. Bulk mRNA sequencing was used to characterize condition-associated transcriptomic changes.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE348nnn/GSE348189 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE348189 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1532969 ncbi.nlm.nih.gov/bioproject/PRJNA1532969 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE348189 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |