Omics · study · 2026
Root transcriptomes of rice OsPSY8 overexpression and knockout lines following polyethylene glycol-induced osmotic stress
Listed in NCBI GEO
To examine the role of OsPSY8 in rice root transcriptional responses to osmotic stress, RNA sequencing was performed on roots of wild-type Kitaake, the OsPSY8 overexpression line OX2, and the ospsy8 knockout line KO1.
Description
Roots were sampled before and 4 h after polyethylene glycol (PEG) treatment. Each of the six genotype-by-time combinations was represented by three biological replicates.
Gene-level counts and counts per million (CPM) are provided for all 18 samples.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE347nnn/GSE347843 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347843 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1531492 ncbi.nlm.nih.gov/bioproject/PRJNA1531492 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE347843 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |