Data · dataset · 2014
Weitemier et al. Hyb-Seq for phylogenomics in plants
Listed in DataCite
Hyb-Seq data matrices used by Weitemier et al. for phylogenomic analyses of Asclepias.
Description
Weitemier_et_al_Asclepias_syriaca_single_copy_gene_exons.fasta contains the sequences of the targeted exons used for probe design. Weitemier_et_al_plastome.phy contains the whole plastome matrix.
Weitemier_et_al_nuclear_concatenated.phy contains a concatenation of all 768 putatively single-copy gene matrices. Weitemier_et_al_nuclear_gene_matrices.tgz is a gzipped tarball of the 768 individual matrices for the putatively single-copy genes. Note that the exons of each gene are concatenated in no particular order.
Read the rest (2 more)
Weitemier_et_al_nuclear_concatenated.tre contains the best ML tree for the concatenation matrix with bootstrap support values. Weitemier_et_al_plastome.tre contains the best ML tree for the plastome matrix with bootstrap support values. Weitemier_et_al_nuclear_gene_trees.tgz contains the bootstrap trees from the ML analysis of each nuclear gene.
Weitemier_et_al_MP-EST_species_tree.tre contains the MP-EST species tree with bootstrap values.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Weitemier_et_al_Hyb_Seq_for_phylogenomics_in_… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1024614 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1024614 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1024614 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences
- From keywords
- Evolutionary biology · Plant biology
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1024614 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |