Supporting data for genome sequence and phenotypic datasets for three calf-associated Parabacteroides isolates

<p dir="ltr">This dataset contains supporting data files for the Data note entitled “Genome sequence and phenotypic datasets for three calf-associated <i>Parabacteroides </i>isolates.” The files provide processed genomic, comparative genomic, antimicrobial resistance screening, visualization, and methodology resources for <i>Parabacteroides </i>sp. KHUB-01, KHUB-02, and KHUB-03, which were recovered from feces of clinically healthy calves.</p><p dir="ltr">Files included:</p><p dir="ltr">Datafile_4_Summary of sequencing output, assembly features, genome quality, and annotation statistics for KHUB-01, KHUB-02, and KHUB-03.xlsx: Summary of sequencing output, assembly features, genome quality metrics, and genome annotation statistics for the three KHUB isolates.</p><p dir="ltr">Datafile_5_Comparative genome assembly quality metrics of KHUB-01, KHUB-02, KHUB-03, and publicly available <i>Parabacteroides </i>reference genomes.xlsx: Comparative genome assembly quality metrics for the KHUB isolates and publicly available <i>Parabacteroides </i>reference genomes.</p><p dir="ltr">Datafile_6_Assembly names and organism names of reference genomes included in the comparative genome analysis.xlsx: Assembly names and organism names of reference genomes used for comparative genomic analysis.</p><p dir="ltr">Datafile_7_ResFinder-based antimicrobial resistance gene hits identified in KHUB-01, KHUB-02, KHUB-03, and reference <i>Parabacteroides </i>genomes.xlsx: ResFinder-based antimicrobial resistance gene hits identified in the KHUB isolates and reference <i>Parabacteroides </i>genomes.</p><p dir="ltr">Datafile_8_Phylogenomic tree and average nucleotide identity heatmap for KHUB-01, KHUB-02, KHUB-03, and reference <i>Parabacteroides </i>genomes.tif: Phylogenomic tree and average nucleotide identity heatmap for the KHUB isolates and reference <i>Parabacteroides </i>genomes.</p><p dir="ltr">Datafile_9_Full methodology description.pdf: Full methodology description for isolate recovery, sequencing, genome assembly, polishing, quality assessment, annotation, comparative genomics, antimicrobial resistance screening, and antimicrobial susceptibility testing.</p>