Omics · study · 2026
Immunophenotyping of peripheral CD8+ T cells from classical Hodgkin Lymphoma patients treated with PD-1 blockade
Listed in NCBI GEO
The immune microenvironment of classical Hodgkin lymphoma (cHL) is characterized by rare Hodgkin–Reed–Sternberg cells surrounded by dysfunctional lymphocytes, with support from PD-1/PD-L1 interactions.
Description
Although PD-1 inhibitors (PD-1i) are effective in some relapsed cHL patients, the mechanisms of resistance remain unclear. We investigated T cell dynamics in cHL using whole-exome sequencing (WES) of plasma circulating tumor DNA and longitudinal single-cell RNA and T-cell receptor sequencing of peripheral blood lymphocytes from a relapsed patient before and after PD-1i therapy.
Findings were validated at the protein level by flow cytometry in 11 relapsed HL patients (pre- and post-PD1i) and 6 healthy age-matched controls, and by PhenoCycler imaging of 24 tissue biopsies (13 diagnostic, 11 post-PD1i). WES identified two somatic mutations at relapse—MEX3B-Lys201* and TNFRSF10A-Tyr409His—potentially contributing to immune escape. Immune profiling revealed clonal expansion of CD8⁺ T cells at relapse and a shift from precursor-like (TCF1⁺) to intermediately exhausted (CX3CR1⁺) phenotypes.
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This pattern was confirmed in other relapsed cHL patients, in whom TCF1⁺ populations diminished, and CX3CR1⁺ T-bet⁺ populations became dominant among those progressing on PD-1 therapy. In tissue biopsies, post-PD1i-treatment CD8⁺ T cells exhibited increased levels of exhaustion markers (TCF1⁻, CX3CR1⁺), a phenotype not observed in diagnostic cHL or healthy donors. These results suggest that durable PD-1i responses depend on the preservation of progenitor-exhausted T cells, whereas relapse post PD1i is marked by the accumulation of intermediately exhausted clones.
Strategies to prevent T cell exhaustion or combine PD-1 inhibition with approaches targeting antigen burden may help overcome resistance.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE337nnn/GSE337135 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337135 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1484113 ncbi.nlm.nih.gov/bioproject/PRJNA1484113 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65% · Imaging 75% · Longitudinal study 65% · Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE337135 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].local:method:longitudinal-study | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:imaging | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |