Omics · study · 2026
Time-course transcriptome of skeletal muscle after contusion in Bama pigs
Listed in NCBI GEO
Accurately estimating the time since injury remains a critical challenge in forensic science and clinical medicine.
Description
To address the significant gap in cross‑species applicability, we first established a high‑resolution transcriptomic atlas of skeletal muscle contusion in Bama miniature pigs. Based on this model, we systematically characterized the early transcriptional dynamics following skeletal muscle injury (SMI) in the same species.
Skeletal muscle tissues were collected at 4, 8, 12, 16, 20, 24, and 48 hours post‑injury for RNA sequencing. Our analysis delineates the time‑dependent transcriptional kinetics and reveals key molecular transitions underlying the injury response and early repair processes.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE312nnn/GSE312173 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312173 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1372595 ncbi.nlm.nih.gov/bioproject/PRJNA1372595 ↗
project · from NCBI GEO
- PubMed 42471333 pubmed.ncbi.nlm.nih.gov/42471333 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Sus scrofa
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE312173 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9823 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |