Omics · study · 2026
Profiling the novel impacts of the organochlorine compounds tris(4-chlorophenyl) methane (TCPM) and tris(4-chlorophenyl) methanol (TCPMOH) on human placental cells
Listed in NCBI GEO
Tris(4-chlorophenyl)methane (TCPM) and tris(4-chlorophenyl)methanol (TCPMOH) are anthropogenic environmental pollutants that are believed to be byproducts of the organochlorine pesticide dichlorodiphenyltrichloroethane (DDT).
Description
TCPMOH is thought to be a metabolite of TCPM. These chemicals persist in the environment, and have been found to accumulate in aquatic mammal tissue and in human breast milk.
They are also potential endocrine disruptors, yet no studies evaluating potential toxic effects have been conducted in the placenta, a transient organ with many endocrine functions critical for fetal development. In this study, TCPM and TCPMOH were screened for its cytotoxic effects, differential gene expression, invasion capacity, and changes to cell cycling. For cell viability and cytotoxicity, HTR-8/SVneo cells were treated with medium plus DMSO (control) or TCPM or TCPMOH (1 µM – 100 µM) for 24-hours and cytotoxicity was measured using Multiplex Multitox Cytotoxicity Assay.
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RNA sequencing of HTR-8/SVneo cells was used for differential gene expression after being treated with medium plus DMSO (control) or TCPMOH (1 µM or 10 µM). Differential gene expression was analyzed using DEseq2 in R.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE338nnn/GSE338198 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE338198 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1492715 ncbi.nlm.nih.gov/bioproject/PRJNA1492715 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE338198 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |