Omics · study · 2026
Effects of depletion of Nat10 on gene expression from bone marrow derived cell
Listed in NCBI GEO
N4-acetylcytidine (ac4C), a form of RNA acetylation catalyzed by N-acetyltransferase 10 (Nat10), acts as a post-transcriptional regulator of RNA function.
Description
However, its role in immune cell function and ulcerative colitis (UC) remains poorly understood. Here, single-cell RNA sequencing revealed a significant downregulation of Nat10 expression in macrophages from UC, which negatively correlated with disease progression.
Conditional deletion of Nat10 in murine macrophages impaired their proliferative capacity without affecting apoptosis, thereby exacerbating dextran sulfate sodium (DSS)-induced colitis. Subsequent transcriptomic analysis identified widespread dysregulation of cell cycle-related genes, with minichromosome maintenance complex component 2 (Mcm2) identified as a direct target of Nat10-mediated ac4C modification. Loss of Nat10 led to accelerated Mcm2 mRNA degradation, resulting in reduced Mcm2 protein levels, whereas overexpression of Mcm2 in Nat10-deficient macrophages restored their proliferative capacity.
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Moreover, Nat10-deficient macrophages exhibited diminished ability to support intestinal epithelial cell growth and self-renewal. Collectively, this study provides the first in vivo evidence that Nat10-mediated ac4C modification sustains macrophage proliferative, attenuating colitis progression through stabilization of Mcm2 mRNA. This work uncovers a novel Nat10–ac4C–Mcm2 axis and highlights its potential as a therapeutic target in UC.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE305nnn/GSE305465 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305465 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1305375 ncbi.nlm.nih.gov/bioproject/PRJNA1305375 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE305465 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |