Data · dataset · 2025
Functional annotation of the phage vB_EcoP_Z06 gene
Listed in ScienceDB
Firstly, the nucleic acid extraction and library construction of bacteriophage vB_EcoP_Z06 were carried out, and sequencing was performed using DNBSEQ-T7.
Description
To ensure the reliability of subsequent information analysis results, we used fastp [1] to filter and quality control the obtained raw sequencing data, cut adapters, remove low-quality reads and reads with high N content, and obtain clean reads. Use metaSPAdes software to perform de novo assembly on clean reads, while selecting different k-mer lengths for testing and obtaining the best assembly results.
Then, use BWA software to align clean reads to the assembled genome sequence for statistical coverage. Finally, the genes were functionally annotated using eggNOG mapper.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.j00231.00033 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 73% · Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.j00231.00033 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3102 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (73%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |