PCA of 23andMe data from openSNP + HapMap

A simple PCA plot done with ~1400 23andMe data sets found on openSNP + the HapMap data. A list of ~100 Ancestry Informative Markers, from biomedcentral.com/1471-2156/10/39, was used for the PCA. Data mangling was done using PLINK.

PCA was run with smartpca, without any optimizing for outliers. Plotting done with R + ggplot2. HapMap population keys can be found here: sanger.ac.uk/resources/downloads/human/hapmap3.html