Text · study · 2026
eIF5A depletion effect on synthesis and decay rates of yeast genes
Listed in NCBI GEO
Maintaining balanced protein levels requires precise control of gene expression and efficient coordination between the different stages of the process, from transcription to translation.
Description
In recent years, several components of the translational apparatus have been found in the nuclei of various eukaryotes, where they regulate transcription, processing or mRNA export, thus integrating different stages of gene expression. eIF5A is an essential and evolutionarily conserved translation elongation factor, which is involved in viral infection and in the development of diseases such as cancer and neurodevelopmental disorders. eIF5A promotes translation elongation by binding to ribosomes that stop at codons encoding amino acids problematic for peptide bond formation, such as consecutive prolines, also known as polyproline motifs.
Although eIF5A shuttles between the nucleus and the cytoplasm, its specific nuclear functions remain poorly defined. In this work we demonstrate that nuclear eIF5A from the yeast Saccharomyces cerevisiae binds to chromatin and represses gene transcription by preventing the binding of RNA polymerase II. Chromatin binding and transcriptional repression by eIF5A have a major impact on genes encoding their own translational targets.
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Thus, the presence of polyproline motifs in the genes imposes translational and transcriptional control by eIF5A. In addition, the active engagement of eIF5A in cytoplasmic translation is required for its repression of transcription. Our results suggest that eIF5A coordinates gene expression by promoting cytoplasmic translation of specific genes while repressing their transcription in the nucleus, thus ensuring efficient final protein synthesis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE302nnn/GSE302334 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302334 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1290098 ncbi.nlm.nih.gov/bioproject/PRJNA1290098 ↗
project · from NCBI GEO
- PubMed 42171687 pubmed.ncbi.nlm.nih.gov/42171687 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by array · Saccharomyces cerevisiae
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE302334 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-array | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:4932 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |