Data · collection · 2019
Transcriptomic profile of cystic fibrosis airway epithelial cells undergoing repair
Listed in DataCite
Lists of differentially expressed genes (FDR 5%, FC 2) according to the comparisons indicated in Figure 2, Table 1 and Table 2.
Description
The lists were from a RNA-seq study comparing the repair process of human airway epithelial cells in primary cultures obtained from patients with cystic fibrosis (CF, n=7) and healthy donors (non-CF, NCF, n=6). Well-differentiated cultures (non-wounded, NW) were mechanically wounded and gene expression was studied at different times of repair i.e. 24h post-wounding (pW), at wound closure (WC) and 2 days after wound closure (pWC).
NW and WC cultures of CF and NCF origins were also exposed for 24h to flagellin, a Pseudomonas aeruginosa virulence factor. Comparisons were done between Times, Groups and Conditions.
Links
Where it is published
- Repository landing page springernature.figshare.com/collections/Transcriptomic_profile_of_cystic_fibrosis_airway_e… ↗
landing page · from DataCite
- Repository landing page springernature.figshare.com/collections/Transcriptomic_profile_of_cystic_fibrosis_airway_e… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.c.4638233 ↗
DOI / persistent id · from DataCite
- DOI doi.org/10.6084/m9.figshare.c.4638233.v1 ↗
DOI / persistent id · from DataCite
Documentation and papers
- CC BY 4.0 creativecommons.org/licenses/by/4.0 ↗
license · from DataCite
- IsSupplementTo 10.1038/s41597-019-0256-6 doi.org/10.1038/s41597-019-0256-6 ↗
publication · from DataCite
Catalogue records · 4
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.c.4638233.v1 ↗
metadata API · from DataCite
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.c.4638233 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.c.4638233.v1 ↗
catalogue entry · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.c.4638233 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Basic medicine · Basic medicine · Biological sciences · Biological sciences · Health sciences · Health sciences
- Inferred from text
- RNA sequencing 65% · Tabular 65%
Provenance · 2 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.c.4638233 | 13 d ago | JSON v1 |
| DataCite | 10.6084/m9.figshare.c.4638233.v1 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| concepts[field].fos:basic-medicine | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:basic-medicine | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:health-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:health-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:tabular | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |