Omics · study · 2026
Hyaluronan induces ERK activation with minimal transcriptomic changes in pancreatic α-cells
Listed in NCBI GEO
Type 1 diabetes (T1D) is driven by the immune-mediated destruction of pancreatic b cells.
Description
Hyaluronan (HA), an extracellular matrix glycosaminoglycan, accumulates in pancreatic islets in patients with T1D and animal models, and has been implicated in promoting chronic inflammation. Inhibition of HA synthesis in T1D model mice attenuates disease progression, suggesting that HA accumulation contributes to disease deterioration.
While b cells are selectively targeted and depleted in T1D, a cells that secrete glucagon are relatively preserved from immune-mediated destruction. Therefore, we hypothesized that accumulated HA may impair a-cell function and thereby contribute to T1D pathophysiology. To investigate this, we performed RNA sequencing on HA-treated a-cell lines and compared the transcriptional profiles to publicly available datasets from a cells isolated from T1D donors.
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This comparison identified several commonly downregulated genes, potentially reflecting HA-induced -cell dysfunction. These findings provide novel insights into the contribution of the islet microenvironment to the pathogenesis of T1D.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE297nnn/GSE297634 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297634 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1265499 ncbi.nlm.nih.gov/bioproject/PRJNA1265499 ↗
project · from NCBI GEO
- PubMed 41816223 pubmed.ncbi.nlm.nih.gov/41816223 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE297634 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |