Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria

This dataset consists of two files: (1) a spreadsheet containing Isolates metadata that covers study site, age, sex, treatment status (study case), HIV status, MDR & pre-XDR status, as well as lineage information inferred from kvarq, phyressse (Phy) and TBProfiler (tbp); and (2) a spreadsheet that contains phenotypic resistance profiles to first line drugs (rifampicin, isoniazid, streptomycin and ethambutol) for all isolates and to second line drugs (capreomycin, fluoroquinolone, ethionamide and amikacin) for MDR isolates.

Table also lists presence of known resistance mutations as detected by the three resistance prediction tools kvarq, phyrese and tbprofiler.