Text · study · 2026
Toxicogenomic studies reveal early mitochondria and ribosome dysfunction in cadmium carcinogenicity
Listed in NCBI GEO
Cadmium (Cd) is a widespread non-essential metal released by natural and anthropogenic activities leading to concern for human health.
Description
The main sources of human Cd exposure are food, drinking water and tobacco smoke. Cd enters the cells through a variety of channels and transport pathways mimicking essential ions.
Once uptaken, Cd can lead to different diseases, including cancer, although its mechanisms are still not fully elucidated. In this work, we performed a toxicogenomics study based on whole-genome microarray analysis of gene modulation induced by Cd treatment (1 and 2 μM CdCl2) in C3H10T1/2 cells, as a model for in vitro carcinogenicity studies in the Cell Transformation Assay . Exploratory analyses using Principal Component Analysis , applying combinations of differential expression analyses using generalized linear models were used.
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Differentially expressed genes as well as the log(FC) were calculated by limma approach.Downstream analyses, such as Gene Ontology and pathway enrichment analysis, along with weighted co-expression network analyses were performed. Data suggest that in the first 24 hrs, the upregulation of metallothioneins and glutathione S- transferase (Gstα 1–3) are not fully efficient in preventing damages caused by Cd.Mitochondria and ribosome dysfunction emerge as the main causes of Cd-induced carcinogenesis, as suggested by results..
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE328nnn/GSE328009 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328009 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1453502 ncbi.nlm.nih.gov/bioproject/PRJNA1453502 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by array · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE328009 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-array | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |