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Text · study · 2026

Large transgene arrays modulate a phenotype of myrf-1 in C. elegans [DNA-Seq]

Listed in NCBI GEO

Multicopy transgene arrays have enabled crucial advances in C. elegans research.

Description

Many have been in use for decades, as they are convenient tools for assaying gene expression and as cell fate reporters. Here, we show a synthetic phenotype of a multicopy molt reporter array and a missense allele, myrf-1(mg412), which was previously reported to cause a heterochronic phenotype, an additional molt in adulthood.

This synthetic phenotype is due to the size or composition of the transgene. We demonstrate that additional multicopy arrays also cause synthetic phenotypes with myrf-1(mg412). Finally, using Nanopore long read sequencing, we show that additional integrated arrays all exceed the size of 6 Mb, comprising a large fraction of the nematode genome.

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We recommend replacing multicopy transgene reporters, whenever possible, with single- or low-copy alternatives with known insertion loci.

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Stated by source
Caenorhabditis elegans · Other
From keywords
Life Sciences
Inferred from text
Sequencing 75%
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE32949613 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:othersource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:sequencingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[organism].NCBITaxon:6239source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title