Text · study · 2026
Large transgene arrays modulate a phenotype of myrf-1 in C. elegans [DNA-Seq]
Listed in NCBI GEO
Multicopy transgene arrays have enabled crucial advances in C. elegans research.
Description
Many have been in use for decades, as they are convenient tools for assaying gene expression and as cell fate reporters. Here, we show a synthetic phenotype of a multicopy molt reporter array and a missense allele, myrf-1(mg412), which was previously reported to cause a heterochronic phenotype, an additional molt in adulthood.
This synthetic phenotype is due to the size or composition of the transgene. We demonstrate that additional multicopy arrays also cause synthetic phenotypes with myrf-1(mg412). Finally, using Nanopore long read sequencing, we show that additional integrated arrays all exceed the size of 6 Mb, comprising a large fraction of the nematode genome.
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We recommend replacing multicopy transgene reporters, whenever possible, with single- or low-copy alternatives with known insertion loci.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE329nnn/GSE329496 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329496 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1459352 ncbi.nlm.nih.gov/bioproject/PRJNA1459352 ↗
project · from NCBI GEO
- PubMed 42146662 pubmed.ncbi.nlm.nih.gov/42146662 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Caenorhabditis elegans · Other
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE329496 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:6239 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |