Omics · study · 2026
Single cell transcriptomic profiling of caridac tissues from different degrees of septic shock mice
Listed in NCBI GEO
Sepsis is a fatal organ dysfunction caused by the imbalance of host response caused by infection.
Description
It has the characteristics of high incidence rate, high mortality and high treatment cost. Heart is one of the most vulnerable target organs in sepsis.
Sepsis can lead to myocardial depression, which is mainly manifested in the impairment of systolic function, cardiac enlargement, decreased ejection fraction and so on. Sepsis induced myocardial dysfunction (SIMD) is an important cause of septic shock and death. Therefore, using single-cell RNA sequencing to clarify the mechanisms of SIMD is of great significance to effectively prevent sepsis shock from developing into multiple organ dysfunctions (MODS) or even death.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE207nnn/GSE207177 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207177 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA854071 ncbi.nlm.nih.gov/bioproject/PRJNA854071 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Heart 75% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE207177 | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |