Omics · study · 2026
Single-nucleus transcriptomic profiling of adult male Japanese medaka brain following parental benzo[a]pyrene exposure
Listed in NCBI GEO
Benzo[a]pyrene (BaP) is a polycyclic aromatic hydrocarbon associated with developmental and neurobehavioral toxicity.
Description
This study examined whether parental BaP exposure produces transcriptional changes in the brains of unexposed adult first filial generation (F1) Japanese medaka. Adult parental fish were exposed to solvent control or 1 µg/L BaP for 21 days; eggs were collected after exposure and F1 offspring were reared in clean water.
Whole brains from three control-lineage and three BaP-lineage adult males were analyzed by single-nucleus RNA sequencing. Fourteen transcriptionally distinct brain cell populations were resolved, and treatment-associated differential expression was evaluated within each cluster.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341551 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341551 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1502924 ncbi.nlm.nih.gov/bioproject/PRJNA1502924 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341551 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |