Omics · study · 2026
Air particulate multiomics improves functional annotation of SNPs associated with lung disease
Listed in NCBI GEO
Asthma and chronic obstructive pulmonary disease (COPD) are influenced by interactions between genetic background and environmental exposures such as air pollutants, yet the mechanisms linking genetic variation and pollutant response remain poorly understood.
Description
We used nascent RNA run-on sequencing to characterize transcriptional responses of lung cells exposed to wood smoke particles, urban particulate matter, and Afghan dust particles.
These datasets provide the first characterization of the nascent transcriptional response to urban particulate matter in primary lung cells and reveal both shared and pollutant-specific regulatory dynamics. Integration with regulatory network inference and genetic association data enables prioritization of noncoding variants and candidate regulatory mechanisms linking environmental exposures to lung disease risk.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327419 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327419 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1450684 ncbi.nlm.nih.gov/bioproject/PRJNA1450684 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327419 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |