Excel · study · 2026
Khellin Modulates DDIT4 to Regulate Autophagy in Triple-Negative Breast Cancer
Listed in NCBI GEO
Objective: To investigate the potential anti-tumor mechanism and clinical impact of Khellin in triple-negative breast cancer (TNBC).
Description
Methodology: MDA-MB-231 cells were treated with 20 μM Khellin for 24 hours, and total RNA was extracted for transcriptome sequencing. Differentially expressed genes (DEGs) were screened, followed by functional and pathway enrichment analyses.
Survival analysis, gene set enrichment analysis, and tumor immune microenvironment (TIME) analysis were employed to study the role of key genes. Subsequently, DDIT4 expression and changes in autophagy marker proteins were assessed using qRT-PCR and Western blot. Results: A total of 158 DEGs were discovered, with high enrichment in signaling pathways such as PI3K-Akt.
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DDIT4 was considerably elevated after Khellin treatment, and higher expression was associated with a better prognosis in TNBC patients. Immune infiltration and single-cell transcriptome analysis demonstrated that elevated DDIT4 expression improves anti-tumor immune activity in the tumor microenvironment. Khellin administration increased the LC3B-II/I ratio and decreased P62 protein production, which could be reversed by autophagy inhibitors.
Conclusion: Khellin upregulates DDIT4 to activate autophagy in TNBC cells and remodel the tumor immune microenvironment. This study elucidates the critical function of DDIT4 in mediating Khellin-induced autophagy and immune modulation, laying the groundwork for a better understanding of its antitumor effects.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE322nnn/GSE322617 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE322617 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1430743 ncbi.nlm.nih.gov/bioproject/PRJNA1430743 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE322617 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |