Popgen Stats from Hufford et al. 2012 Nat. Gen.

Summary statistics for 10kb windows genome-wide and for genes in the maize v2 filtered gene set. Data are from Hufford et al. 2012: nature.com/ng/journal/v44/n7/full/ng.2309.html See details in the paper for criteria for calling SNPs, data used for statistics, etc. Columns are: locus: GRM name of gene in the filtered gene set S: number of Segregating sites ThetaW: Watterson's estimate of theta (per locus) ThetaPi: nucleotide diversity (per locus) ThetaH: Fay and Wu (2000) estimator (per locus) TajD: Tajima's D seqbp: # of bp sequenced. this should be used as the denominator to calculate per bp. values of the above statistics.