Imaging · study · 2026
Spatial transcriptomics of Slc16a1-Col2a1CreERT2 mouse spinal motion segments reveals compartment-distinct differences in the intervertebral disc
Listed in NCBI GEO
The intervertebral disc is a compartmentalized structure, with an inner nucleus pulposus (NP) surrounding by annulus fibrosus (AF), and bordered superiorly and inferiorly by cartilaginous endplates.
Description
Glucose is known to be the primary energy source for the disc -- in which gets metabolized into lactate. While lactate efflux out of the NP is critical, the fate of lactate is undetermined.
Thus, we've generated Slc16a1-Col2a1CreERT2 mice which inhibit lactate transport into the AF and EP compartments of the disc. We took into an exploratory approach and employed spatial transcriptomics which allowed us to capture positional gene information, including crosstalk between disc compartments, in which otherwise would be lost without spatial sequencing. Our analysis revealed the consequences of long-term MCT1 inhibition in the AF- and endplates on gene expression.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE287nnn/GSE287499 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE287499 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1213094 ncbi.nlm.nih.gov/bioproject/PRJNA1213094 ↗
project · from NCBI GEO
- PubMed 42236482 pubmed.ncbi.nlm.nih.gov/42236482 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Mus musculus · Other
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE287499 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |