Data · dataset · 2011
Genomic data from the polar bear ( Ursus maritimus ).
Listed in DataCite
The polar bear ( Ursus maritimus ) is one of the largest land carnivores, second only to the Alaskan brown bear.
Description
In an effort to adapt to the extremely cold Arctic environment, it has evolved many unique characteristics. However, ecological pressures pose a grave threat to the survival of polar bears.
The polar bear genome provides significant contributions to research concerning evolution, biodiversity and climate change. In 2010, the BGI completed the first draft of the genome sequence of a 25 years old male polar bear. Using next-generation sequencing technology (Illumina GA) to obtain about 101-fold genome coverage, and SOAPdenovo, the self-developed short reads assembly method, a high quality draft genome sequence was assembled with an N50 scaffold size of 15.9 megabases (Mb), and function elements annotation was finished.
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A reference gene set that contained around 21,000 genes for the polar bear was predicted. The transposable elements comprised approximately 37% of the polar bear genome. The data also includes genome and SNP annotations, with SNP information from 18 polar bear and 10 brown bear individuals sampled from Greenland and Alaska.
Links
Where it is published
- Repository landing page gigadb.org/dataset/100008 ↗
landing page · from DataCite
- DOI doi.org/10.5524/100008 ↗
DOI / persistent id · from DataCite
Documentation and papers
- Creative Commons Zero v1.0 Universal creativecommons.org/publicdomain/zero/1.0/legalcode ↗
license · from DataCite
- IsCitedBy 10.1016/j.cell.2014.03.054 doi.org/10.1016/j.cell.2014.03.054 ↗
publication · from DataCite
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.5524/100008 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.5524/100008 ↗
catalogue entry · from DataCite
Topics
- Inferred from text
- Genome sequencing 65% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.5524/100008 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |