Data · dataset · 2026
Fungal ITS2 data from Pyroleae and Monotropa hypopitys germination study
Listed in GBIF and Researchdata.se — shown once because both records carry DOI 10.15468/pv9a3t
This dataset contains ITS metabarcoding data describing fungal communities associated with germinating seeds and early developmental stages of Pyroleae species and Monotropa hypopitys in Sweden.
Description
The data were generated using high-throughput sequencing of the ITS2 region to characterize ectomycorrhizal fungal diversity and its relationship to plant development and ecological conditions.DescriptionThe dataset originates from a field-based seed sowing experiment designed to investigate fungal associations during early ontogeny of mycoheterotrophic and partially mycoheterotrophic plants (Johansson et al. 2017).
Seed bags were deployed across multiple forest sites and retrieved over multiple years to assess germination, seedling development, and associated fungal communities. DNA was extracted from germinated seedlings and analyzed using ITS metabarcoding of the ITS2 region. The resulting dataset includes operational taxonomic units (OTUs), taxonomic assignments, and sequence read abundances, providing a detailed characterization of fungal diversity associated with early plant life stages.PurposeThe purpose of this dataset is to document the diversity and composition of fungal communities associated with early developmental stages of selected plant species and to support research on plant-fungal interactions, mycoheterotrophy, and forest ecosystem processes, building on the findings presented in Johansson et al. 2017, Mol Ecol, 26: 2591-2604. doi.org/10.1111/mec.14050 This dataset was published via the SBDI ASV portal .
Links
Get the data
- Darwin Core Archive gbif.se/ipt/archive.do?r=pyrola-its2-2011-2012 ↗
download · from gbif
Where it is published
- GBIF dataset page gbif.org/dataset/d19074ea-f1cf-42ba-9109-e99a5e6a50a5 ↗
landing page · from gbif
- DOI doi.org/10.15468/pv9a3t ↗
DOI / persistent id · from gbif
Catalogue records · 2
- GBIF API api.gbif.org/v1/dataset/d19074ea-f1cf-42ba-9109-e99a5e6a50a5 ↗
metadata API · from gbif
- OAI-PMH record api.researchdata.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from researchdata se
Topics
- From keywords
- Earth & Environmental Science · Life Sciences · Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 2 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| GBIF | d19074ea-f1cf-42ba-9109-e99a5e6a50a5 | 13 d ago | JSON v1 |
| Researchdata.se | oai:researchdata.se:gbif-sweden-10-15468-pv9a3t/0 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · gbif | connector:gbif@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · gbif | connector:gbif@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · gbif | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · gbif | connector:gbif@1.0.0 | |
| description | source · gbif | connector:gbif@1.0.0 | /description |
| license | source · gbif | connector:gbif@1.0.0 | |
| publication_date | source · gbif | connector:gbif@1.0.0 | |
| spatial | source · gbif | connector:gbif@1.0.0 | |
| title | source · gbif | connector:gbif@1.0.0 | /title |
| updated_date | source · gbif | connector:gbif@1.0.0 |