Omics · dataset · 2019
Highly Multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins
Listed in CaltechDATA
This directory contains sequencing data in fastq format for three scRNA-seq experiments found in Gehring et al. "Highly Multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins" (Nat.
Description
Biotech.). A four-sample proof-of-concept experiment, an 8-sample Limits of Multiplexing (LoM) experiment, and a 96-sample growth factor titration.
The files can be processed with single-cell RNA-seq software such as kallisto. We provide Google Colab notebooks that download and process the data to more compressed data formats.
Links
Where it is published
- CaltechDATA record data.caltech.edu/records/a73n8-3pa89 ↗
landing page · from data caltech edu
- DOI doi.org/10.22002/d1.1311 ↗
DOI / persistent id · from data caltech edu
Catalogue records · 1
- InvenioRDM API data.caltech.edu/api/records/a73n8-3pa89 ↗
metadata API · from data caltech edu
Topics
- Stated by source
- genomics · Multiplexing · single-cell RNA sequencing
- From keywords
- Earth & Environmental Science · Engineering · Genomics · Humanities · Life Sciences · Single-cell RNA sequencing · Social Science
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 18 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| CaltechDATA | a73n8-3pa89 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].anzsrc:field:310509 | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].local:field:earth-environmental | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:engineering | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:humanities | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:social-science | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · data caltech edu | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · data caltech edu | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['Single-Cell RNA-Sequencing'] |
| concepts[topic].invenio_subject:data_caltech_edu:genomics | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:multiplexing | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:single-cell-rna-sequencing | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| description | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/description |
| publication_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| title | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/title |
| updated_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| version_label | source · data caltech edu | connector:data_caltech_edu@1.0.0 |