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Omics · study · 2026

Bulk RNA sequencing of THP-1-derived macrophage-like cells with stable PGK1 overexpression versus empty vector control

Listed in NCBI GEO

This project contains bulk transcriptomic data from THP-1 cells, a human monocyte cell line, that were differentiated into macrophage-like cells and used to model tumour-associated macrophages in triple-negative breast cancer (TNBC).

Description

THP-1 cells stably expressing either an empty vector or PGK1 were generated via lentiviral infection (pLVX constructs; puromycin selection). Cells were stimulated with 150 nM phorbol 12-myristate 13-acetate (PMA) for 24 h to induce differentiation into M0 macrophages, followed by 20 ng/mL IL-4 and IL-13 for 24 h, before RNA extraction.

Total RNA was isolated with the RNAsimple Total RNA Kit (FOREGENE) and all six libraries were sequenced in a single batch at Lianchuan (Hangzhou, China).

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Topics

From keywords
Life Sciences
Inferred from text
Cancer 75% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE34812615 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[disease].local:disease:cancerenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[organism].NCBITaxon:9606source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title