Omics · study · 2026
Single-cell transcriptomic characterization of stiffness-dependent transcriptomic changes in hepatic stellate cells
Listed in NCBI GEO
Matrix stiffness is a key driver of hepatic stellate cell (HSC) activation.
Description
HSCs have long been known to undergo spontaneous activation when cultured on conventional rigid tissue-culture polystyrene (TCPS). However, the stiffness of TCPS is typically in the gigapascal range, far exceeding the physiological range of liver stiffness, which is measured in kilopascals.
This study aimed to determine how substrate stiffness shapes transcriptomic profiles of primary mouse HSCs. To this end, we performed single-cell RNA sequencing (scRNA-seq) of freshly isolated HSCs and HSCs cultured on substrates with different stiffness.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE337nnn/GSE337886 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337886 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1491457 ncbi.nlm.nih.gov/bioproject/PRJNA1491457 ↗
project · from NCBI GEO
- PubMed 42684624 pubmed.ncbi.nlm.nih.gov/42684624 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE337886 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |