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Omics · study · 2026

Single-cell transcriptomic characterization of stiffness-dependent transcriptomic changes in hepatic stellate cells

Listed in NCBI GEO

Matrix stiffness is a key driver of hepatic stellate cell (HSC) activation.

Description

HSCs have long been known to undergo spontaneous activation when cultured on conventional rigid tissue-culture polystyrene (TCPS). However, the stiffness of TCPS is typically in the gigapascal range, far exceeding the physiological range of liver stiffness, which is measured in kilopascals.

This study aimed to determine how substrate stiffness shapes transcriptomic profiles of primary mouse HSCs. To this end, we performed single-cell RNA sequencing (scRNA-seq) of freshly isolated HSCs and HSCs cultured on substrates with different stiffness.

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Life Sciences
Inferred from text
RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE33788615 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:single-cell-rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title