Table · dataset · 2026
Transcript FASTA, per-transcript annotations, AS/lncRNA/CDS/TF/SSR for Auxenochlorella pyrenoidosa SHOU-1002
Listed in ZivaHub and Deakin Research Online and HKU DataHub and DaYta Ya Rona and figshare and Loughborough Research Repository and UP Research Data Repository — shown once because both records carry DOI 10.6084/m9.figshare.34022280.v1
<p dir="ltr">Auxenochlorella pyrenoidosa is valued for both biofuel production and nutritional lipids.
Description
The study presents a full-length transcriptome analysis of this species under nitrogen-sufficient and nitrogen-starvation conditions. Using single-molecule real-time (SMRT) sequencing on the PacBio Sequel platform, we generated 6.46 million HiFi reads and obtained 68,417 high-confidence non-redundant transcripts.
Functional annotation assigned putative functions to 94.74% of these sequences. Comprehensive analyses identified 65,032 protein-coding transcripts, each represented by a single best ORF selected from 70,785 candidate ORFs initially predicted by TransDecoder, together with 4,910 long non-coding RNAs, 111,209 unvalidated transcript-pair differgences, 811transcription factors from 56 families, and 21,699 simple sequence repeats.
Read the rest (1 more)
This dataset provides a transcript-level sequence reference for A. pyrenoidosa, including a non-redundant transcript catalog of candidate transcript sequences and putative sequence variants. It is intended to serve as a resource for future genome-guided studies and for investigations into transcript diversity in this species.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.34022280.v1 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Aquaculture · Aquaculture · Aquaculture · Aquaculture · Aquaculture · Aquaculture · Aquaculture · Astronomy & Astrophysics · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Engineering · Engineering · Humanities · Humanities · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Ocean & Atmospheric Science · Psychology & Behavioral Science · Social Science · Social Science · Social Science · Social Science
- Inferred from text
- Sequencing 75%
Provenance · 7 source records, 49 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/34022280 | 5 d ago | JSON v1 |
| Deakin Research Online | oai:figshare.com:article/34022280 | 5 d ago | JSON v1 |
| HKU DataHub | oai:figshare.com:article/34022280 | 5 d ago | JSON v1 |
| DaYta Ya Rona | oai:figshare.com:article/34022280 | 5 d ago | JSON v1 |
| figshare | oai:figshare.com:article/34022280 | 4 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/34022280 | 4 d ago | JSON v1 |
| UP Research Data Repository | oai:figshare.com:article/34022280 | 4 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].anzsrc:field:300501 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Aquaculture'] |
| concepts[field].anzsrc:field:300501 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Aquaculture'] |
| concepts[field].anzsrc:field:300501 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Aquaculture'] |
| concepts[field].anzsrc:field:300501 | mapping · dayta nwu ac za | vocabulary-mapper@1.0.0 | keywords['Aquaculture'] |
| concepts[field].anzsrc:field:300501 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Aquaculture'] |
| concepts[field].anzsrc:field:300501 | mapping · dro deakin edu au | vocabulary-mapper@1.0.0 | keywords['Aquaculture'] |
| concepts[field].anzsrc:field:300501 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Aquaculture'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |