Data · dataset · 2013
De novo assembly of Ensete ventricosum genome sequence
Listed in DataCite
Description
This file contains a de novo assembly of the Ensete ventricosum genome based on whole-genome shotgun sequencing by Illumina HiSeq paired reads and assembled using SOAPdenovo. This assembly has, in part, been submitted to GenBank under accession number AMZH00000000.1 (ncbi.nlm.nih.gov/nuccore/AMZH00000000.1/). However, because of limitations on the number of supercontigs/contigs that GenBank will accept, we did not submit supercontigs and contigs of shorter than 5 kb.
The raw data are available from the Sequence Read Archive under accession number SRX202265 (see ncbi.nlm.nih.gov/sra?LinkName=nuccore_sra_wgs&from_uid=440571971). Data are described in this paper: Harrison, J.; Moore, K.A.; Paszkiewicz, K.; Jones, T.; Grant, M.R.; Ambacheew, D.; Muzemil, S.; Studholme, D.J. A Draft Genome Sequence for Ensete ventricosum, the Drought-Tolerant “Tree Against Hunger”. Agronomy 2014, 4, 13-33.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/De_novo_assembly_of_Ensete_ventricosum_genome… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.828488 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.828488 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.828488 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
- From keywords
- Genetics · Plant biology
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.828488 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |