Data · dataset · 2013
Transcriptome characterization of the Olympia oyster and pinto abalone
Listed in DataCite
Transcriptome information for the Olympia oyster and pinto abalone.
Description
Data S1. Ostrea lurida transcriptome.
Assembled contigs of O. lurida transcriptome sequencing. Data S2. Haliotis kamtschatkana transcriptome.
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Assembled contigs of H. kamtschatkana sequencing. Data S3. Ostrea lurida SPIDs.
BLASTx results for O. lurida contig search against the UniProtKB/Swiss-Prot database. BLAST e-values and gene descriptions are also given. Data S4.
Ostrea lurida GO. Gene Ontology annotations of O. lurida contigs. GO annotations are made based on associations with a Swiss-Prot ID.
Data S5. Haliotis kamtschatkana SPIDs. BLASTx results for H. kamtschatkana contig search against the UniProtKB/Swiss-Prot database.
BLAST e-values and gene descriptions are also given. Data S6. Haliotis kamtschatkana GO.
Gene Ontology annotations of H. kamtschatkana contigs. GO annotations are made based on associations with a Swiss-Prot ID. Data S7.
Ostrea lurida bitscores. Bit scores for BLASTn results of O. lurida contigs against species-specific databases of other closely related species. Data S8.
Haliotis kamtschatkana bitscores. Bit scores for BLASTn results of H. kamtschatkana contigs against species-specific databases of other closely related species. Data S9.
Ostrea lurida SNPs. SNP information for putative SNPs identified in the O. lurida transcriptome. Contig numbers are listed in the leftmost column, followed by SNP location and allele.
Annotations of the contigs, as determined through a BLASTx against the UniProtKB/Swiss-Prot database, are given along with the e-value for the BLAST result. Data S10. Haliotis kamtschatkana SNPs.
SNP information for putative SNPs identified in the H. kamtschatkana transcriptome. Contig numbers are listed in the leftmost column, followed by SNP location and allele. Annotations of the contigs, as determined through a BLASTx against the UniProtKB/Swiss-Prot database, are given along with the e-value for the BLAST result.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Transcriptome_characterization_of_the_Olympia… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.156431 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.156431 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.156431 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.156431 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |